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Item Along-Shore Movement of Groundwater and Its Effects on Seawater-Groundwater Interactions in Heterogeneous Coastal Aquifers(Water Resources Research, 2021-12-14) Geng, Xiaolong; Michael, Holly A.Studies of coastal groundwater dynamics often assume two-dimensional (2D) flow and transport along a shore-perpendicular cross-section. We show that along-shore movement of groundwater may also be significant in heterogeneous coastal aquifers. Simulations of groundwater flow and salt transport incorporating different geologic structure show highly three-dimensional (3D) preferential flow paths. The along-shore movement of groundwater on average accounts for 40%–50% of the total flowpath length in both conduit-type (e.g., volcanic) heterogeneous aquifers and statistically equivalent (e.g., deltaic) systems generated with sequential indicator simulation (SIS). Our results identify a critical role of three-dimensionality in systems with connected high-permeability geological features. 3D conduit features connecting land and sea cause more terrestrial groundwater flow through the inland boundary and intensify water exchange along the land-sea interface. Therefore, conduits increase the rate of SGD compared to equivalent homogeneous, SIS and corresponding 2D models. In contrast, in SIS-type systems, less-connected high-permeability features produce mixing zones and SGD nearer to shore, with comparable rates in 3D and 2D models. Onshore, 3D heterogeneous cases have longer flowpaths and travel times from recharge to discharge compared to 2D cases, but offshore travel times are much shorter, particularly for conduit-type models in which flow is highly preferential. Flowpath lengths and travel times are also highly variable in 3D relative to 2D for all heterogeneous simulations. The results have implications for water resources management, biogeochemical reactions within coastal aquifers, and subsequent chemical fluxes to the ocean. Plain Language Summary: The findings of this study provide insight into the complex patterns of groundwater flow under the influence of geologic variability in coastal aquifers. In coastal regions, studies of solute transport processes mainly rely on an assumption of 2D groundwater flow and solute transport in the shore-perpendicular direction. Our results reveal that groundwater does not only flow toward the sea, it also can flow along-shore, especially in aquifers with features that connect the onshore and offshore. This affects exchange and mixing between fresh and saline groundwater, which can strongly impact delivery of contaminants and nutrients to sensitive nearshore marine ecosystems. Results highlight the importance of characterizing the geology of coastal aquifers and representing it in models of groundwater flow and contaminant transport.Item Aqueous Geochemical Controls on the Sestonic Microbial Community in Lakes Michigan and Superior(Microorganisms, 2023-02-17) Rani, Asha; Ranjan, Ravi; Bonina, Solidea M. C.; Izadmehr, Mahsa; Giesy, John P.; Li, An; Sturchio, Neil C.; Rockne, Karl J.Despite being the largest freshwater lake system in the world, relatively little is known about the sestonic microbial community structure in the Laurentian Great Lakes. The goal of this research was to better understand this ecosystem using high-throughput sequencing of microbial communities as a function of water depth at six locations in the westernmost Great Lakes of Superior and Michigan. The water column was characterized by gradients in temperature, dissolved oxygen (DO), pH, and other physicochemical parameters with depth. Mean nitrate concentrations were 32 μmol/L, with only slight variation within and between the lakes, and with depth. Mean available phosphorus was 0.07 μmol/L, resulting in relatively large N:P ratios (97:1) indicative of P limitation. Abundances of the phyla Actinobacteria, Bacteroidetes, Cyanobacteria, Thaumarchaeota, and Verrucomicrobia differed significantly among the Lakes. Candidatus Nitrosopumilus was present in greater abundance in Lake Superior compared to Lake Michigan, suggesting the importance of ammonia-oxidating archaea in water column N cycling in Lake Superior. The Shannon diversity index was negatively correlated with pH, temperature, and salinity, and positively correlated with DO, latitude, and N2 saturation. Results of this study suggest that DO, pH, temperature, and salinity were major drivers shaping the community composition in the Great Lakes.Item Assessing the use of a camera system within an autonomous underwater vehicle for monitoring the distribution and density of sea scallops (Placopecten magellanicus) in the Mid-Atlantic Bight(National Marine Fisheries Service., 2016-04-26) Walker, Justin H.; Trembanis, Arthur C.; Miller, Douglas C.; Justin H. Walker, Arthur C. Trembanis and Douglas C. Miller; Walker, Justin H.; Trembanis, Arthur C.; Miller, Douglas C.The sea scallop (Placopecten magellanicus) fishery in the Atlantic is assessed during annual surveys by using both dredging and surface-deployed imaging techniques. In this pilot study in the Mid-Atlantic Bight, we used an autonomous underwater vehicle (AUV) to photograph the seafloor and to evaluate its use for determining scallop density and size. During 22 surveys in 2011, 257 km of seafloor were photographed, resulting in over 203,000 color images. Using trained annotators and photogrammetric software, we determined scallop density and shell heights for 15,252 scallops. The inshore scallop grounds near Long Island (at depths <40 m) had a density of 0.077 scallops per m2, whereas the inshore grounds of the New York Bight had a density of 0.012 scallops per m2. Shell heights derived from images were found to agree well with measurements from scallops collected with a commercial dredge. We show that images obtained with an AUV can be used to reliably estimate both density and shell height consistent with direct sampling from the same area. Moreover, side-scan sonar images obtained with an AUV can be used to detect dredge scars and, therefore, can provide a simultaneous, relative estimate of fishing effort in that area. AUVs provide a highly accurate suite of data for each survey site and therefore allow the design of experimental studies of fishing practices.Item Coastal topography and hydrogeology control critical groundwater gradients and potential beach surface instability during storm surges(Hydrology and Earth System Sciences, 2022-12-02) Paldor, Anner; Stark, Nina; Florence, Matthew; Raubenheimer, Britt; Elgar, Steve; Housego, Rachel; Frederiks, Ryan S.; Michael, Holly A.Ocean surges pose a global threat for coastal stability. These hazardous events alter flow conditions and pore pressures in flooded beach areas during both inundation and subsequent retreat stages, which can mobilize beach material, potentially enhancing erosion significantly. In this study, the evolution of surge-induced pore-pressure gradients is studied through numerical hydrologic simulations of storm surges. The spatiotemporal variability of critically high gradients is analyzed in three dimensions. The analysis is based on a threshold value obtained for quicksand formation of beach materials under groundwater seepage. Simulations of surge events show that, during the run-up stage, head gradients can rise to the calculated critical level landward of the advancing inundation line. During the receding stage, critical gradients were simulated seaward of the retreating inundation line. These gradients reach maximum magnitudes just as sea level returns to pre-surge levels and are most accentuated beneath the still-water shoreline, where the model surface changes slope. The gradients vary along the shore owing to variable beach morphology, with the largest gradients seaward of intermediate-scale (1–3 m elevation) topographic elements (dunes) in the flood zone. These findings suggest that the common practices in monitoring and mitigating surge-induced failures and erosion, which typically focus on the flattest areas of beaches, might need to be revised to include other topographic features.Item Critical facility accessibility and road criticality assessment considering flood-induced partial failure(Sustainable and Resilient Infrastructure, 2022-11-25) Gangwal, Utkarsh; Siders, A. R.; Horney, Jennifer; Michael, Holly A.; Dong, ShangjiaThis paper examines communities’ accessibility to critical facilities such as hospitals, emergency medical services, and emergency shelters when facing flooding. We use travel speed reduction to account for flood-induced partial road failure. A modified betweenness centrality metric is also introduced to calculate the criticality of roads for connecting communities to critical facilities. The proposed model and metric are applied to the Delaware road network under 100-year floods. This model highlights the severe critical facility access loss risk due to flood isolation of facilities. The mapped post-flooding accessibility suggests a significant travel time increase to critical facilities and reveals disparities among communities, especially for vulnerable groups such as long-term care facility residents. We also identified critical roads that are vital for post-flooding access to critical facilities. The results of this research can help inform targeted infrastructure investment decisions and hazard mitigation strategies that contribute to equitable community resilience enhancement.Item Dynamic Steady State in Coastal Aquifers Is Driven by Multi-Scale Cyclical Processes, Controlled by Aquifer Storativity(Geophysical Research Letters, 2022-05-24) Paldor, Anner; Frederiks, Ryan S.; Michael, Holly A.Coastal aquifers supply freshwater to nearly half the global population, yet they are threatened by salinization. Salinities are typically estimated assuming steady-state, neglecting the effect of cyclical forcings on average salinity distributions. Here, numerical modeling is used to test this assumption. Multi-scale fluctuations in sea level (SL) are simulated, from tides to glacial cycles. Results show that high-frequency fluctuations alter average salinities compared with the steady-state distribution produced by average SL. Low-frequency forcing generates discrepancies between present-day salinities estimated with and without considering the cyclical forcing due to overshoot effects. This implies that salinities in coastal aquifers may be erroneously estimated when assuming steady-state conditions, since present distributions are likely part of a dynamic steady state that includes forcing on multiple timescales. Further, typically neglected aquifer storage characteristics can strongly control average salinity distributions. This has important implications for managing vulnerable coastal groundwater resources and for calibration of hydrogeological models. Key Points: - Average salinities in coastal aquifers are affected by low-frequency cyclical changes in sea level (SL) - High-frequency cyclical forcings generate episodic discrepancies in salinity when modeled with and without considering these processes - Under these multi-scale fluctuations in SL, dynamic steady states of coastal aquifers are affected by aquifer storage properties Plain Language Summary: Coastal communities rely heavily on groundwater for freshwater supply, and the primary risk for this vital resource is salinization. Multiple processes in the ocean-land interface control the salinity of coastal aquifers, and assessments of salinities typically neglect some of these processes. In this work, we show that some of the typically neglected processes may be responsible for large-scale, systematic discrepancies between actual and estimated salinities. This has important implications for the assessment of risks to coastal groundwater reservoirs and for the long-term management of these resources.Item Effects of Geologic Setting on Contaminant Transport in Deltaic Aquifers(Water Resources Research, 2022-08-25) Xu, Zhongyuan; Hariharan, Jayaram; Passalacqua, Paola; Steel, Elisabeth; Chadwick, Austin; Paola, Chris; Paldor, Anner; Michael, Holly A.Coastal deltaic aquifers are vulnerable to degradation from seawater intrusion, geogenic and anthropogenic contamination, and groundwater abstraction. The distribution and transport of contaminants are highly dependent on the subsurface sedimentary architecture, such as the presence of channelized features that preferentially conduct flow. Surface deposition changes in response to sea-level rise (SLR) and sediment supply, but it remains unclear how these surface changes affect the distribution and transport of groundwater solutes in aquifers. Here, we explore the influence of SLR and sediment supply on aquifer heterogeneity and resulting effects on contaminant transport. We use realizations of subsurface heterogeneity generated by a process-based numerical model, DeltaRCM, which simulates the evolution of a deltaic aquifer with different input sand fractions and rates of SLR. We simulate groundwater flow and solute transport through these deposits in three contamination scenarios: (a) vertical transport from widespread contamination at the land surface, (b) vertical transport from river water infiltration, and (c) lateral seawater intrusion. The simulations show that the vulnerability of deltaic aquifers to seawater intrusion correlates to sand fraction, while vertical transport of contaminants, such as widespread shallow contamination and river water infiltration, is influenced by channel stacking patterns. This analysis provides new insights into the connection between the depositional system properties and vulnerability to different modes of groundwater contamination. It also illustrates how vulnerability may vary locally within a delta due to depositional differences. Results suggest that groundwater management strategies may be improved by considering surface features, location within the delta, and the external forcings during aquifer deposition. Plain Language Summary: The findings of this study provide insight into the vulnerability of deltaic aquifers to three contamination processes: (a) widespread contaminant transport from the land surface, (b) river water infiltration, and (c) seawater intrusion. We consider how contamination is affected by the location of contaminants and the processes associated with the accumulation of sediments in deltas. Our work shows that vulnerability to contamination depends on how the aquifer is deposited. The results also demonstrate that the distribution of sandy channels preserved in the subsurface, as well as rivers on the surface, controls vertical contaminant transport. We find that these effects vary from upstream to downstream in the delta because of spatial differences in depositional processes. These findings will help to improve predictions of groundwater contamination and manage groundwater development in deltas around the world.Item Evidence for chemically heterogeneous Arctic mantle beneath the Gakkel Ridge(Elsevier, 2015-12-07) D’Errico, Megan E.; Warren, Jessica M.; Godard, Marguerite; Megan E. D’Errico, Jessica M. Warren, Marguerite Godard; Warren, Jessica M.Ultraslow spreading at mid-ocean ridges limits melting due to on-axis conductive cooling, leading to the prediction that peridotites from these ridges are relatively fertile. To test this, we examined abyssal peridotites from the Gakkel Ridge, the slowest spreading ridge in the global ocean ridge system. Major and trace element concentrations in pyroxene and olivine minerals are reported for 14 dredged abyssal peridotite samples from the Sparsely Magmatic (SMZ) and Eastern Volcanic (EVZ) Zones. We observe large compositional variations among peridotites from the same dredge and among dredges in close proximity to each other. Modeling of lherzolite trace element compositions indicates varying degrees of non-modal fractional mantle melting, whereas most harzburgite samples require open-system melting involving interaction with a percolating melt. All peridotite chemistry suggests significant melting that would generate a thick crust, which is inconsistent with geophysical observations at Gakkel Ridge. The refractory harzburgites and thin overlying oceanic crust are best explained by low present-day melting of a previously melted heterogeneous mantle. Observed peridotite compositional variations and evidence for melt infiltration demonstrates that fertile mantle components are present and co-existing with infertile mantle components. Melt generated in the Gakkel mantle becomes trapped on short length-scales, which produces selective enrichments in very incompatible rare earth elements. Melt migration and extraction may be significantly controlled by the thick lithosphere induced by cooling at such slow spreading rates. We propose the heterogeneous mantle that exists beneath Gakkel Ridge is the consequence of ancient melting, combined with subsequent melt percolation and entrapment.Item Floodplain Sediment Storage Timescales of the Laterally Confined Meandering Powder River, USA(Journal of Geophysical Research: Earth Surface, 2022-01-11) Huffman, Max E.; Pizzuto, James E.; Trampush, Sheila M.; Moody, John A.; Schook, Derek M.; Gray, Harrison J.; Mahan, Shannon A.As sediment is transported through river corridors, it typically spends more time in storage than transport, and as a result, sediment delivery timescales are controlled by the duration of storage. Present understanding of storage timescales is largely derived from models or from field studies covering relatively short (≤102 year) time spans. Here we quantify the storage time distribution for a 17 km length of Powder River in Montana, USA by determining the age distribution of eroded sediment. Our approach integrates surveyed cross-sections, analysis of historical aerial imagery, aerial LiDAR, geomorphic mapping, and age control provided by optically stimulated luminescence (OSL) and dendrochronology. Sediment eroded by Powder River from 1998 to 2013 ranges from a few years to ∼5,000 years in age; ages are exponentially distributed (r2 = 0.78; Anderson-Darling p value 0.003). Eroded sediment is derived from Powder River's meander belt (∼900 m wide), which is only 1.25 times its meander wavelength, a value reflecting valley confinement rather than free meandering. The mean storage time, 824 years (95% C.I. 610–1030 years), is similar to the time required to rework deposits of Powder River's meander belt based on an average meander migration rate of ∼1 m/yr, implying that storage time distributions of confined meandering rivers can be quantified from remotely sensed estimates of meander belt width and channel migration rates. Heavy-tailed storage time distributions, frequently cited from physical and numerical modeling studies, may be restricted to unconfined meandering rivers. Plain Language Summary: As sediment moves downstream through a watershed it is intermittently stored in a river's deposits before being eroded and transported farther downstream. Storage times vary from less than a decade to millennia. Storage time greatly exceeds the time sediment is being transported by the river. Consequently, the time required for sediment to reach a point downstream is largely controlled by the time spent in storage. This can influence how the movement of contaminants are monitored and restoration strategies are developed. Sediment particles spend different amounts of time in storage, which can be represented as a probability distribution. Here we date sediment eroded by Powder River in southeastern Montana from 1998 to 2013 and find that the storage time distribution is exponential. Furthermore, the mean storage time of 824 years (which fully characterizes the exponential distribution) can be determined from the meander belt width and the channel migration rate, both of which can be measured using aerial imagery, providing a simple method for assessing storage times in laterally confined rivers.Item Frequent Storm Surges Affect the Groundwater of Coastal Ecosystems(Geophysical Research Letters, 2023-01-09) Nordio, Giovanna; Frederiks, Ryan; Hingst, Mary; Carr, Joel; Kirwan, Matt; Gedan, Keryn; Michael, Holly; Fagherazzi, SergioRecent studies have focused on the effect of large tropical cyclones (hurricanes) on the shore, neglecting the role of less intense but more frequent events. Here we analyze the effect of the offshore tropical storm Melissa on groundwater data collected along the North America Atlantic coast. Our meta-analysis indicates that both groundwater level and specific conductivity significantly increased during Melissa, respectively reaching maximum values of 1.09 m and 25.2 mS/cm above pre-storm levels. Time to recover to pre-storm levels was 10 times greater for groundwater specific conductivity, with a median value of 20 days, while groundwater level had a median recovery time of 2 days. A frequency-magnitude analysis indicates that the percent of time with salinization is higher for Melissa than for energetic hurricanes. Given the high frequency of these events (return period of 1–2 years), and the long time needed for groundwater conditions to return to normal levels, we conclude that increasingly frequent moderate storms will have a significant impact on the ecology of vegetated shorelines. Key Points: - Salinization - Coastal areas - Groundwater Plain Language Summary: Salinization and flooding events due to sea level rise and storm surges threaten coastal ecosystems, changing groundwater characteristics. Moderate and more frequent storm surges can have a significant impact on coastal ecology, similar to larger tropical cyclones. Salinity and water table elevation need time to recover to normal conditions. The recovery time is compared to the frequency of these moderate storm surge events to determine the effect on the coastal groundwater.Item Global variations in abyssal peridotite compositions(Elsevier, 2016-01-09) Warren, Jessica M.; Jessica M.Warren; Warren, Jessica M.Abyssal peridotites are ultramafic rocks collected frommid-ocean ridges that are the residues of adiabatic decompression melting. Their compositions provide information on the degree of melting and melt–rock interaction involved in the formation of oceanic lithosphere, as well as providing constraints on pre-existing mantle heterogeneities. This review presents a compilation of abyssal peridotite geochemical data (modes, mineral major elements, and clinopyroxene trace elements) for N1200 samples from 53 localities on 6 major ridge systems. On the basis of composition and petrography, peridotites are classified into one of five lithological groups: (1) residual peridotite, (2) dunite, (3) gabbro-veined and/or plagioclase-bearing peridotite, (4) pyroxenite-veined peridotite, and (5) other types of melt-added peridotite. Almost a third of abyssal peridotites are veined, indicating that the oceanic lithospheric mantle is more fertile, on average, than estimates based on residual peridotites alone imply. All veins appear to have formed recently during melt transport beneath the ridge, though some pyroxenites may be derived from melting of recycled oceanic crust. A limited number of samples are available at intermediate and fast spreading rates, with samples from the East Pacific Rise indicating high degrees of melting. At slow and ultra-slow spreading rates, residual abyssal peridotites define a large (0–15% modal clinopyroxene and spinel Cr#=0.1–0.6) compositional range. These variations do not match the prediction for how degree of melting should vary as a function of spreading rate. Instead, the compositional ranges of residual peridotites are derived from a combination of melting, melt–rock interaction and pre-existing compositional variability, where melt–rock interaction is used here as a general term to refer to the wide range of processes that can occur during melt transport in the mantle. Globally, ~10% of abyssal peridotites are refractory (0% clinopyroxene, spinel Cr# N 0.5, bulk Al2O3 b 1wt.%) and someridge sections are dominated by harzburgiteswhile lacking a significant basaltic crust. Abyssal ultramafic samples thus indicate that the mantle ismulti-component, probably consisting of at least three components (lherzolite, harzburgite, and pyroxenite). Overall, the large compositional rangeamong residual andmelt-added peridotites implies that the oceanic lithospheric mantle is heterogeneous, which will lead to the generation of further heterogeneities upon subduction back into the mantle.Item Hydrogen Diffusion in Clinopyroxene at Low Temperatures (195°C–400°C) and Consequences for Subsurface Processes(Geochemistry, Geophysics, Geosystems, 2022-12-12) Bissbort, Thilo; Lynn, Kendra J.; Becker, Hans-Werner; Chakraborty, SumitStudying diffusion of hydrogen in nominally anhydrous minerals, like clinopyroxene, at low temperatures is a challenging task due to experimental and analytical difficulties. In this study, to overcome these problems we have produced H concentration gradients in single crystals of natural diopsidic clinopyroxene by ion implantation and measured the nanoscale profiles before and after diffusion anneals using Nuclear Resonance Reaction Analysis. These steps allowed us to conduct experiments at temperatures between 195°C and 400°C. Obtained diffusion rates show a consistent Arrhenius relation DH= 5.47(±13.98) · 10−8 · exp (−115.64(±11.5) kJ mol−1/RT) m2s−1. Notably, our results lie well within the range of extrapolations from high temperature experiments (≥600°C) of previous studies. This implies that fast diffusion of hydrogen (compared to other elements) extends to low temperatures. We used these results in a non-isothermal diffusion model that simulates the ascent of crystals (0.5, 1.0, and 2.0 mm) along two representative P-T-paths from 600°C to 100°C, to assess potential re-equilibration of H contents in clinopyroxene at low temperatures. Our model highlights the need to carefully consider boundary conditions, which are a function of P-T-fO2, that control the concentration gradient at the crystal's rim. The results from this model help to assess, as a function of crystal size and cooling rate, when re-equilibration must be considered. Key Points - Diffusion rates of hydrogen in clinopyroxene in the low temperature range (195°C–400°C) were quantified for the first time - Diffusion coefficients at low temperatures lie within the range of extrapolations from high temperature experiments - Non-isothermal modeling was applied to evaluate potential re-equilibration of clinopyroxene crystals at low temperaturesItem Hydrologic Control on Arsenic Cycling at the Groundwater–Surface Water Interface of a Tidal Channel(Environmental Science and Technology, 2023-01-10) Yu, Xuan; LeMonte, Joshua J.; Li, Junxia; Stuckey, Jason W.; Sparks, Donald L.; Cargill, John G.; Russoniello, Christopher J.; Michael, Holly A.Historical industrial activities have resulted in soil contamination at sites globally. Many of these sites are located along coastlines, making them vulnerable to hydrologic and biogeochemical alterations due to climate change and sea-level rise. However, the impact of hydrologic dynamics on contaminant mobility in tidal environments has not been well studied. Here, we collected data from pressure transducers in wells, multi-level redox sensors, and porewater samplers at an As-contaminated site adjacent to a freshwater tidal channel. Results indicate that sharp redox gradients exist and that redox conditions vary on tidal to seasonal timescales due to sub-daily water level fluctuations in the channel and seasonal groundwater–surface water interactions. The As and Fe2+ concentrations decreased during seasonal periods of net discharge to the channel. The seasonal changes were greater than tidal variations in both Eh and As concentrations, indicating that impacts of the seasonal mechanism are stronger than those of sub-daily water table fluctuations. A conceptual model describing tidal and seasonal hydro-biogeochemical coupling is presented. These findings have broad implications for understanding the impacts of sea-level rise on the mobility of natural and anthropogenic coastal solutes.Item Hydrothermal alteration of seafloor peridotites does not influence oxygen fugacity recorded by spinel oxybarometry(Geological Society of America, 2016-06-01) Birner, Suzanne K.; Warren, Jessica M.; Cottrell, Elizabeth; Davis, Fred A.; Suzanne K. Birner, Jessica M. Warren, Elizabeth Cottrell, and Fred A. Davis; Warren, Jessica M.Olivine, orthopyroxene, and spinel compositions within seafloor peridotites yield important information about the nature of Earth’s mantle. Major element compositions of these minerals can be used to calculate oxygen fugacity, a thermodynamic property critical to understanding phase equilibria in the upper mantle. This study examines how hydrothermal alteration at the seafloor influences peridotite chemistry. The Tonga Trench (South Pacific Ocean) exposes lithospheric forearc peridotites that range from highly altered to completely unaltered and provides an ideal sample suite for investigating the effect of alteration on spinel peridotite major element chemistry and calculated oxygen fugacity. Using the Tonga peridotites, we develop a qualitative alteration scale rooted in traditional point-counting methodology. We show that high degrees of serpentinization do not affect mineral parameters such as forsterite number in olivine, iron site occupancy in orthopyroxene, and Fe3+/SFe ratio in spinel. Additionally, while serpentinization is a redox reaction that leaves behind an oxidized residue, the oxygen fugacity recorded by mantle minerals is unaffected by nearby low-temperature serpentinization. As a result, oxygen fugacity measured by spinel oxybarometry in seafloor peridotites is representative of mantle processes, rather than an artifact of late-stage seafloor alteration.Item Impact of topography on groundwater salinization due to ocean surge inundation(American Geophysical Union, 2016-08-05) Yu, Xuan; Graf, Thomas; Koneshloo, Mohammad; O'Neal, Michael A.; Michael, Holly A.; Yang, Jie; Xuan Yu, Jie Yang, Thomas Graf, Mohammad Koneshloo, Michael A. O'Neal, Holly A. Michael; Yu, Xuan; Koneshloo, Mohammad; O'Neal, Michael A; Michael, Holly A.Sea-level rise and increases in the frequency and intensity of ocean surges caused by climate change are likely to exacerbate adverse effects on low-lying coastal areas. The landward flow of water during ocean surges introduces salt to surficial coastal aquifers and threatens groundwater resources. Coastal topographic features (e.g., ponds, dunes, barrier islands, and channels) likely have a strong impact on overwash and salinization processes, but are generally highly simplified in modeling studies. To understand topographic impacts on groundwater salinization, we modeled a theoretical overwash event and variable-density groundwater flow and salt transport in 3-D using the fully coupled surface and subsurface numerical simulator, HydroGeoSphere. The model simulates the coastal aquifer as an integrated system considering overland flow, coupled surface and subsurface exchange, variably saturated flow, and variable-density groundwater flow. To represent various coastal landscape types, we simulated both synthetic fields and real-world coastal topography from Delaware, USA. The groundwater salinization assessment suggested that the topographic connectivity promoting overland flow controls the volume of aquifer that is salinized. In contrast, the amount of water that can be stored in surface depressions determines the amount of seawater that infiltrates the subsurface and the time for seawater to flush from the aquifer. Our study suggests that topography has a significant impact on groundwater salinization due to ocean surge overwash, with important implications for coastal land management and groundwater vulnerability assessment.Item Iron Oxidation by a Fused Cytochrome-Porin Common to Diverse Iron-Oxidizing Bacteria(mBio, 2021-07-27) Keffer, Jessica L.; McAllister, Sean M.; Garber, Arkadiy I.; Hallahan, Beverly J.; Sutherland, Molly C.; Rozovsky, Sharon; Chan, Clara S.Iron (Fe) oxidation is one of Earth’s major biogeochemical processes, key to weathering, soil formation, water quality, and corrosion. However, our understanding of microbial contribution is limited by incomplete knowledge of microbial iron oxidation mechanisms, particularly in neutrophilic iron oxidizers. The genomes of many diverse iron oxidizers encode a homolog to an outer membrane cytochrome (Cyc2) shown to oxidize iron in two acidophiles. Phylogenetic analyses show Cyc2 sequences from neutrophiles cluster together, suggesting a common function, though this function has not been verified in these organisms. Therefore, we investigated the iron oxidase function of heterologously expressed Cyc2 from a neutrophilic iron oxidizer Mariprofundus ferrooxydans PV-1. Cyc2PV-1 is capable of oxidizing iron, and its redox potential is 208 ± 20 mV, consistent with the ability to accept electrons from Fe2+ at neutral pH. These results support the hypothesis that Cyc2 functions as an iron oxidase in neutrophilic iron-oxidizing organisms. The results of sequence analysis and modeling reveal that the entire Cyc2 family shares a unique fused cytochrome-porin structure, with a defining consensus motif in the cytochrome region. On the basis of results from structural analyses, we predict that the monoheme cytochrome Cyc2 specifically oxidizes dissolved Fe2+, in contrast to multiheme iron oxidases, which may oxidize solid Fe(II). With our results, there is now functional validation for diverse representatives of Cyc2 sequences. We present a comprehensive Cyc2 phylogenetic tree and offer a roadmap for identifying cyc2/Cyc2 homologs and interpreting their function. The occurrence of cyc2 in many genomes beyond known iron oxidizers presents the possibility that microbial iron oxidation may be a widespread metabolism.Item Linking the Surface and Subsurface in River Deltas—Part 2: Relating Subsurface Geometry to Groundwater Flow Behavior(Water Resources Research, 2021-08-02) Xu, Zhongyuan; Hariharan, Jayaram; Passalacqua, Paola; Steel, Elisabeth; Paola, Chris; Michael, Holly A.Understanding subsurface structure and groundwater flow in deltaic aquifers is essential for evaluating the vulnerability of groundwater resources in delta systems. Deltaic aquifers contain coarse-grained paleochannels that preserve a record of former surface river channels as well as fine-grained floodplain deposits. The distribution of these deposits and how they are interconnected control groundwater flow and contaminant transport. In this work, we link depositional environments of deltaic aquifers to stratigraphic (static) and flow and transport (dynamic) connectivity metrics. Numerical models of deltaic stratigraphy were generated using a reduced-complexity numerical model (DeltaRCM) with different input sand fractions (ISF) and rates of sea-level rise (SLR). The groundwater flow and advective transport behavior of these deltas were simulated using MODFLOW and MODPATH. By comparing the static and dynamic metrics calculated from these numerical models, we show that groundwater behavior can be predicted by particular aspects of the subsurface architecture, and that horizontal and vertical connectivity display different characteristics. We also evaluate relationships between connectivity metrics and two environmental controls on delta evolution: ISF and SLR rate. The results show that geologic setting strongly influences both static and dynamic connectivity in different directions. These results provide insights into quantitatively differentiated subsurface hydraulic behavior between deltas formed under different external forcing (ISF and SLR rate) and they are a potential link in using information from delta surface networks and depositional history to predict vulnerability to aquifer contamination. Plain Language Summary: Geologic structure and groundwater flow behaviors influence groundwater resources in delta plains. In deltaic aquifers, channel structures were created by past surface rivers. These channels in the subsurface are “fast-travel” pathways for groundwater and contaminants. We created synthetic delta structures with a numerical model and then simulated groundwater flow through them in order to tie geologic structure to groundwater flow behavior. By using many different models, we investigate how structure and flow relate, and how the subsurface geology and groundwater system are affected by different sediment inputs and sea-level rise rates. The findings will help us better manage delta groundwater resources and provide an opportunity to predict groundwater contamination from surface characteristics.Item Mantle Sulfides and their Role in Re–Os and Pb Isotope Geochronology(Mineralogical Society of America, 2015-12-14) Harvey, Jason; Warren, Jessica M.; Shirey, Steven B.; Jason Harvey, Jessica M. Warren, Steven B. Shirey; Warren, Jessica M.Item Mechanisms of extracellular S0 globule production and degradation in Chlorobaculum tepidum via dynamic cell–globule interactions(Microbiology Society, 2016-01-07) Marnocha, C. L.; Levy, A. T.; Powell, D. H.; Hanson, T. E.; Chan, C. S.; C. L. Marnocha, A. T. Levy, D. H. Powell, T. E. Hanson and C. S. Chan; Marnocha, C. L.; Levy, A. T.; Powell, D. H.; Hanson, T. E.; Chan, C. S.The Chlorobiales are anoxygenic phototrophs that produce solid, extracellular elemental sulfur globules as an intermediate step in the oxidation of sulfide to sulfate. These organisms must export sulfur while preventing cell encrustation during S0 globule formation; during globule degradation they must find and mobilize the sulfur for intracellular oxidation to sulfate. To understand how the Chlorobiales address these challenges, we characterized the spatial relationships and physical dynamics of Chlorobaculum tepidum cells and S0 globules by light and electron microscopy. Cba. tepidum commonly formed globules at a distance from cells. Soluble polysulfides detected during globule production may allow for remote nucleation of globules. Polysulfides were also detected during globule degradation, probably produced as an intermediate of sulfur oxidation by attached cells. Polysulfides could feed unattached cells, which made up over 80% of the population and had comparable growth rates to attached cells. Given that S0 is formed remotely from cells, there is a question as to how cells are able to move toward S0 in order to attach. Time-lapse microscopy shows that Cba. tepidum is in fact capable of twitching motility, a finding supported by the presence of genes encoding type IV pili. Our results show how Cba. tepidum is able to avoid mineral encrustation and benefit from globule degradation even when not attached. In the environment, Cba. tepidum may also benefit from soluble sulfur species produced by other sulfur-oxidizing or sulfur-reducing bacteria as these organisms interact with its biogenic S0 globules.Item Megacity pumping and preferential flow threaten groundwater quality(Nature Publishing Group, 2016-09-27) Khan, Mahfuzur R.; Koneshloo, Mohammad; Knappett, Peter S.K.; Ahmed, Kazi M.; Bostick, Benjamin C.; Mailloux, Brian J.; Mozumder, Rajib H.; Zahid, Anwar; Harvey, Charles F.; van Geen, Alexander; Michael, Holly A.; Mahfuzur R. Khan, Mohammad Koneshloo, Peter S.K. Knappett, Kazi M. Ahmed, Benjamin C. Bostick, Brian J. Mailloux, Rajib H. Mozumder, Anwar Zahid, Charles F. Harvey, Alexander van Geen & Holly A. Michael; Khan, Mahfuzur R.; Koneshloo, Mohammad; Michael, Holly A.Many of the world’s megacities depend on groundwater from geologically complex aquifers that are over-exploited and threatened by contamination. Here, using the example of Dhaka, Bangladesh, we illustrate how interactions between aquifer heterogeneity and groundwater exploitation jeopardize groundwater resources regionally. Groundwater pumping in Dhaka has caused large-scale drawdown that extends into outlying areas where arseniccontaminated shallow groundwater is pervasive and has potential to migrate downward. We evaluate the vulnerability of deep, low-arsenic groundwater with groundwater models that incorporate geostatistical simulations of aquifer heterogeneity. Simulations show that preferential flow through stratigraphy typical of fluvio-deltaic aquifers could contaminate deep (4150 m) groundwater within a decade, nearly a century faster than predicted through homogeneous models calibrated to the same data. The most critical fast flowpaths cannot be predicted by simplified models or identified by standard measurements. Such complex vulnerability beyond city limits could become a limiting factor for megacity groundwater supplies in aquifers worldwide.